Sepang:QUALIFY
| Pos | Driver | Team | Car | Class | Time | Gap | Laps | Points |
|---|---|---|---|---|---|---|---|---|
| 1 | Roland Pinter | Advantage Racing | SIMCO GP3 Series 2016 | SIMCO GP3 Series 2016 | 1:53.471 | -:--.--- | 011 | 6 |
| 2 | Gabor Tim | Racing Spirit | SIMCO GP3 Series 2016 | SIMCO GP3 Series 2016 | 1:53.525 | 0:00.054 | 012 | 4 |
| 3 | Janos Hegyvari | Speed Cat Racing | SIMCO GP3 Series 2016 | SIMCO GP3 Series 2016 | 1:54.087 | 0:00.616 | 015 | 3 |
| 4 | Milan Berki | VSR Team | SIMCO GP3 Series 2016 | SIMCO GP3 Series 2016 | 1:54.156 | 0:00.685 | 012 | 2 |
| 5 | Milan Siran | Golden Buffalo Racing | SIMCO GP3 Series 2016 | SIMCO GP3 Series 2016 | 1:54.250 | 0:00.778 | 011 | 1 |
| 6 | Balazs Kiss | Golden Buffalo Racing | SIMCO GP3 Series 2016 | SIMCO GP3 Series 2016 | 1:54.551 | 0:01.080 | 013 | 0 |
| 7 | Gergely Egervari | Padtars Racing Team | SIMCO GP3 Series 2016 | SIMCO GP3 Series 2016 | 1:54.694 | 0:01.223 | 014 | 0 |
| 8 | Patrik Bachrati | Speed Cat Racing | SIMCO GP3 Series 2016 | SIMCO GP3 Series 2016 | 1:54.881 | 0:01.410 | 011 | 0 |
| 9 | Balint Kovacs | GP3 Hungary Racing | SIMCO GP3 Series 2016 | SIMCO GP3 Series 2016 | 1:55.008 | 0:01.536 | 014 | 0 |
| 10 | Istvan Mikle | Red Bull Racing | SIMCO GP3 Series 2016 | SIMCO GP3 Series 2016 | 1:55.096 | 0:01.625 | 010 | 0 |
| 11 | Mate Veres | Padtars Racing Team | SIMCO GP3 Series 2016 | SIMCO GP3 Series 2016 | 1:55.106 | 0:01.634 | 012 | 0 |
| 12 | Imre Bende | Racing Spirit | SIMCO GP3 Series 2016 | SIMCO GP3 Series 2016 | 1:55.221 | 0:01.750 | 010 | 0 |
| 13 | Tamas Cseh | Golden Buffalo Racing | SIMCO GP3 Series 2016 | SIMCO GP3 Series 2016 | 1:55.593 | 0:02.122 | 010 | 0 |
| 14 | Attila Takacs | GP3 Hungary Racing | SIMCO GP3 Series 2016 | SIMCO GP3 Series 2016 | 1:55.739 | 0:02.268 | 010 | 0 |
| 15 | Nemes Zsolt | JPS Racing | SIMCO GP3 Series 2016 | SIMCO GP3 Series 2016 | 1:56.479 | 0:03.009 | 011 | 0 |
| 16 | Attila Vegh | Padtars Racing Team | SIMCO GP3 Series 2016 | SIMCO GP3 Series 2016 | 1:57.097 | 0:03.627 | 010 | 0 |
| 17 | Zoltan Szabo | Racing Spirit | SIMCO GP3 Series 2016 | SIMCO GP3 Series 2016 | 1:57.932 | 0:04.461 | 009 | 0 |
